J5_8C3A_006

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

8C3A|1|1|G|2396, 8C3A|1|1|A|2771, 8C3A|1|1|G|2772, 8C3A|1|1|A|2773, 8C3A|1|1|A|2774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8C3A_006 not in the Motif Atlas

Homologous match to J5_5TBW_006

Geometric discrepancy: 0.0725

The information below is about J5_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_71788.4

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8C3A|1|1|U|2394
8C3A|1|1|U|2395
8C3A|1|1|G|2396
8C3A|1|1|A|2397
*
8C3A|1|1|U|2583
8C3A|1|1|U|2584
8C3A|1|1|U|2585
8C3A|1|1|G|2586
*
8C3A|1|1|C|2599
8C3A|1|1|A|2600
*
8C3A|1|1|U|2622
8C3A|1|1|G|2623
*
8C3A|1|1|C|2770
8C3A|1|1|A|2771
8C3A|1|1|G|2772
8C3A|1|1|A|2773
8C3A|1|1|A|2774
8C3A|1|1|A|2775
8C3A|1|1|A|2776

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AB

60S ribosomal protein L28

Chain AC

60S ribosomal protein L29

Chain AP

60S ribosomal protein L42-B

Chain j

60S ribosomal protein L2-B

Chain v

60S ribosomal protein L15-A

Chain y

60S ribosomal protein L18-A