J5_3JAM_002

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

3JAM|1|2|A|93, 3JAM|1|2|C|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JAM_002 not in the Motif Atlas

Homologous match to J5_8C3A_020

Geometric discrepancy: 0.0608

The information below is about J5_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JAM|1|2|C|54
3JAM|1|2|A|55
3JAM|1|2|U|56
3JAM|1|2|G|57
*
3JAM|1|2|C|90
3JAM|1|2|G|91
3JAM|1|2|A|92
3JAM|1|2|A|93
3JAM|1|2|U|94
3JAM|1|2|G|95
3JAM|1|2|G|96
3JAM|1|2|C|97
*
3JAM|1|2|G|385
3JAM|1|2|A|386
3JAM|1|2|G|387
*
3JAM|1|2|C|408
3JAM|1|2|A|409
3JAM|1|2|C|410
*
3JAM|1|2|G|421
3JAM|1|2|G|422
3JAM|1|2|C|423
3JAM|1|2|A|424
3JAM|1|2|G|425

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain J

uS4

Chain Y

eS24