Motif J5_59910.4 Version J5_59910.4 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9		10		11	break		12		13		14	break		15		16		17	break		18		19		20		21	1-21	3-6	3-8	4-5	10-13	11-12	11-20	12-20	14-15	16-19	17-18
1	J5_8P9A_017	8P9A	0.1524	2	sR	SSU rRNA	C	54	A	55	U	56	G	57	*	C	90	G	91	A	92	U	94	G	95	G	96	C	97	*	G	386	A	387	G	388	*	C	409	A	410	C	411	*	G	422	G	423	A	425	G	426	cWW	tWS		cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW
2	J5_8C3A_020	8C3A	0.1463	2	CM	SSU rRNA	C	54	A	55	U	56	G	57	*	C	90	G	91	A	92	U	94	G	95	G	96	C	97	*	G	384	A	385	G	386	*	C	407	A	408	C	409	*	G	420	G	421	A	423	G	424	cWW	ntWS		cWW	cWW	cWW	csS	tsS	cWW	cWW	cWW
3	J5_5J7L_003	5J7L	0.0998	2	AA	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	C	316	*	G	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs		cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW
4	J5_4LFB_002	4LFB	0.0000	2	A	SSU rRNA	C	58	A	59	A	60	G	61	*	C	106	G	107	G	108	C	110	G	111	G	112	G	113	*	C	314	A	315	G	316	*	C	337	A	338	C	339	*	G	350	G	351	A	353	G	354	cWW	ntSs		cWW	cWW	cWW	csS	ntsS	cWW	cWW	cWW
5	J5_6CZR_021	6CZR	0.1202	2	1a	SSU rRNA	C	59	A	60	A	61	G	62	*	C	100	G	101	G	102	C	104	G	105	G	106	G	107	*	C	310	A	311	G	312	*	C	333	A	334	C	335	*	G	346	G	347	A	349	G	350	cWW		ntHW	ncWW	ncWW	cWW	csS	ntsS	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUGCGAAUGGCGAGCACGGCAG	2
CAAGCGGACGGGCAGCACGGCAG	2
CAAGCGGACGGGCACGACGGCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAGGACGGAAGCA	3
AUGAAUGGAAGCA	2

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Heat map statistics: Min 0.09 | Avg 0.12 | Max 0.18

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Coloring options: Nucleotide numbers

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