J5_3JAN_001
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AAGGAGUCUA*UAGGACC*GGUUCC*GGCC*GCAGAUCUU
- Length
- 36 nucleotides
- Bulged bases
- 3JAN|1|5|C|2289, 3JAN|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|5|A|1333
3JAN|1|5|A|1334
3JAN|1|5|G|1335
3JAN|1|5|G|1336
3JAN|1|5|A|1337
3JAN|1|5|G|1338
3JAN|1|5|U|1339
3JAN|1|5|C|1340
3JAN|1|5|U|1341
3JAN|1|5|A|1342
*
3JAN|1|5|U|1514
3JAN|1|5|A|1515
3JAN|1|5|G|1516
3JAN|1|5|G|1517
3JAN|1|5|A|1518
3JAN|1|5|C|1519
3JAN|1|5|C|1520
*
3JAN|1|5|G|1657
3JAN|1|5|G|1658
3JAN|1|5|U|1659
3JAN|1|5|U|1660
3JAN|1|5|C|1661
3JAN|1|5|C|1662
*
3JAN|1|5|G|2287
3JAN|1|5|G|2288
3JAN|1|5|C|2289
3JAN|1|5|C|2290
*
3JAN|1|5|G|2345
3JAN|1|5|C|2346
3JAN|1|5|A|2347
3JAN|1|5|G|2348
3JAN|1|5|A|2349
3JAN|1|5|U|2350
3JAN|1|5|C|2351
3JAN|1|5|U|2352
3JAN|1|5|U|2353
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
Coloring options: