J5_3JAN_002
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGAGU*GCGCAAUGAAGGUGAAG*CGAG*CGG*CACGAG
- Length
- 35 nucleotides
- Bulged bases
- 3JAN|1|5|A|1387, 3JAN|1|5|A|1397, 3JAN|1|5|C|1501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|5|C|1352
3JAN|1|5|G|1353
3JAN|1|5|A|1354
3JAN|1|5|G|1355
3JAN|1|5|U|1356
*
3JAN|1|5|G|1383
3JAN|1|5|C|1384
3JAN|1|5|G|1385
3JAN|1|5|C|1386
3JAN|1|5|A|1387
3JAN|1|5|A|1388
3JAN|1|5|U|1389
3JAN|1|5|G|1390
3JAN|1|5|A|1391
3JAN|1|5|A|1392
3JAN|1|5|G|1393
3JAN|1|5|G|1394
3JAN|1|5|U|1395
3JAN|1|5|G|1396
3JAN|1|5|A|1397
3JAN|1|5|A|1398
3JAN|1|5|G|1399
*
3JAN|1|5|C|1418
3JAN|1|5|G|1419
3JAN|1|5|A|1420
3JAN|1|5|G|1421
*
3JAN|1|5|C|1464
3JAN|1|5|G|1465
3JAN|1|5|G|1466
*
3JAN|1|5|C|1499
3JAN|1|5|A|1500
3JAN|1|5|C|1501
3JAN|1|5|G|1502
3JAN|1|5|A|1503
3JAN|1|5|G|1504
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain Q
- Ribosomal protein eL18
- Chain a
- Ribosomal protein uL15
- Chain b
- Ribosomal protein eL29
- Chain i
- Ribosomal protein eL36
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