J5_3JAN_005
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGAAGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGUC
- Length
- 37 nucleotides
- Bulged bases
- 3JAN|1|5|G|3620, 3JAN|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|5|G|2847
3JAN|1|5|G|2848
3JAN|1|5|A|2849
3JAN|1|5|A|2850
3JAN|1|5|G|2851
3JAN|1|5|U|2852
3JAN|1|5|C|2853
3JAN|1|5|G|2854
3JAN|1|5|G|2855
3JAN|1|5|C|2856
3JAN|1|5|A|2857
3JAN|1|5|A|2858
3JAN|1|5|G|2859
3JAN|1|5|C|2860
3JAN|1|5|C|2861
3JAN|1|5|G|2862
3JAN|1|5|G|2863
*
3JAN|1|5|U|2887
3JAN|1|5|G|2888
*
3JAN|1|5|U|3613
3JAN|1|5|G|3614
*
3JAN|1|5|C|3618
3JAN|1|5|G|3619
3JAN|1|5|G|3620
3JAN|1|5|A|3621
3JAN|1|5|C|3622
3JAN|1|5|C|3623
3JAN|1|5|A|3624
3JAN|1|5|G|3625
3JAN|1|5|G|3626
*
3JAN|1|5|C|3835
3JAN|1|5|A|3836
3JAN|1|5|C|3837
3JAN|1|5|U|3838
3JAN|1|5|G|3839
3JAN|1|5|U|3840
3JAN|1|5|C|3841
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein uL3
- Chain R
- Ribosomal protein eL19
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- Ribosomal protein uL14
- Chain W
- Ribosomal protein eL24
Coloring options: