J5_3JAN_005

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGAAGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGUC

Length

37 nucleotides

Bulged bases

3JAN|1|5|G|3620, 3JAN|1|5|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|2847
3JAN|1|5|G|2848
3JAN|1|5|A|2849
3JAN|1|5|A|2850
3JAN|1|5|G|2851
3JAN|1|5|U|2852
3JAN|1|5|C|2853
3JAN|1|5|G|2854
3JAN|1|5|G|2855
3JAN|1|5|C|2856
3JAN|1|5|A|2857
3JAN|1|5|A|2858
3JAN|1|5|G|2859
3JAN|1|5|C|2860
3JAN|1|5|C|2861
3JAN|1|5|G|2862
3JAN|1|5|G|2863
*
3JAN|1|5|U|2887
3JAN|1|5|G|2888
*
3JAN|1|5|U|3613
3JAN|1|5|G|3614
*
3JAN|1|5|C|3618
3JAN|1|5|G|3619
3JAN|1|5|G|3620
3JAN|1|5|A|3621
3JAN|1|5|C|3622
3JAN|1|5|C|3623
3JAN|1|5|A|3624
3JAN|1|5|G|3625
3JAN|1|5|G|3626
*
3JAN|1|5|C|3835
3JAN|1|5|A|3836
3JAN|1|5|C|3837
3JAN|1|5|U|3838
3JAN|1|5|G|3839
3JAN|1|5|U|3840
3JAN|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain R

Ribosomal protein eL19

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain V

Ribosomal protein uL14

Chain W

Ribosomal protein eL24