3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UUGA*UUUGA*UACA*UG*CAGAAAA
Length
22 nucleotides
Bulged bases
3JAN|1|5|G|3922, 3JAN|1|5|A|4203, 3JAN|1|5|A|4376, 3JAN|1|5|G|4377, 3JAN|1|5|A|4378, 3JAN|1|5|A|4379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|5|U|3920
3JAN|1|5|U|3921
3JAN|1|5|G|3922
3JAN|1|5|A|3923
*
3JAN|1|5|U|4188
3JAN|1|5|U|4189
3JAN|1|5|U|4190
3JAN|1|5|G|4191
3JAN|1|5|A|4192
*
3JAN|1|5|U|4202
3JAN|1|5|A|4203
3JAN|1|5|C|4204
3JAN|1|5|A|4205
*
3JAN|1|5|U|4227
3JAN|1|5|G|4228
*
3JAN|1|5|C|4375
3JAN|1|5|A|4376
3JAN|1|5|G|4377
3JAN|1|5|A|4378
3JAN|1|5|A|4379
3JAN|1|5|A|4380
3JAN|1|5|A|4381

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain A
Ribosomal protein uL2
Chain I
Ribosomal protein uL16
Chain N
Ribosomal protein eL15
Chain Q
Ribosomal protein eL18
Chain T
Ribosomal protein eL21
Chain a
Ribosomal protein uL15
Chain o
Ribosomal protein eL42

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3861 s
Application loaded.