J5_3JAN_008
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UUGA*UUUGA*UACA*UG*CAGAAAA
- Length
- 22 nucleotides
- Bulged bases
- 3JAN|1|5|G|3922, 3JAN|1|5|A|4203, 3JAN|1|5|A|4376, 3JAN|1|5|G|4377, 3JAN|1|5|A|4378, 3JAN|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAN|1|5|U|3920
3JAN|1|5|U|3921
3JAN|1|5|G|3922
3JAN|1|5|A|3923
*
3JAN|1|5|U|4188
3JAN|1|5|U|4189
3JAN|1|5|U|4190
3JAN|1|5|G|4191
3JAN|1|5|A|4192
*
3JAN|1|5|U|4202
3JAN|1|5|A|4203
3JAN|1|5|C|4204
3JAN|1|5|A|4205
*
3JAN|1|5|U|4227
3JAN|1|5|G|4228
*
3JAN|1|5|C|4375
3JAN|1|5|A|4376
3JAN|1|5|G|4377
3JAN|1|5|A|4378
3JAN|1|5|A|4379
3JAN|1|5|A|4380
3JAN|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein uL2
- Chain I
- Ribosomal protein uL16
- Chain N
- Ribosomal protein eL15
- Chain Q
- Ribosomal protein eL18
- Chain T
- Ribosomal protein eL21
- Chain a
- Ribosomal protein uL15
- Chain o
- Ribosomal protein eL42
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