J5_3JAN_011

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAUGCAUGUCUAAG*CUGCGAAUGGC*GAG*CACAUC*GAAGGCAGCAG

Length

45 nucleotides

Bulged bases

3JAN|1|S2|U|55, 3JAN|1|S2|A|92

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|C|49
3JAN|1|S2|A|50
3JAN|1|S2|U|51
3JAN|1|S2|G|52
3JAN|1|S2|C|53
3JAN|1|S2|A|54
3JAN|1|S2|U|55
3JAN|1|S2|G|56
3JAN|1|S2|U|57
3JAN|1|S2|C|58
3JAN|1|S2|U|59
3JAN|1|S2|A|60
3JAN|1|S2|A|61
3JAN|1|S2|G|62
*
3JAN|1|S2|C|86
3JAN|1|S2|U|87
3JAN|1|S2|G|88
3JAN|1|S2|C|89
3JAN|1|S2|G|90
3JAN|1|S2|A|91
3JAN|1|S2|A|92
3JAN|1|S2|U|93
3JAN|1|S2|G|94
3JAN|1|S2|G|95
3JAN|1|S2|C|96
*
3JAN|1|S2|G|434
3JAN|1|S2|A|435
3JAN|1|S2|G|436
*
3JAN|1|S2|C|457
3JAN|1|S2|A|458
3JAN|1|S2|C|459
3JAN|1|S2|A|460
3JAN|1|S2|U|461
3JAN|1|S2|C|462
*
3JAN|1|S2|G|467
3JAN|1|S2|A|468
3JAN|1|S2|A|469
3JAN|1|S2|G|470
3JAN|1|S2|G|471
3JAN|1|S2|C|472
3JAN|1|S2|A|473
3JAN|1|S2|G|474
3JAN|1|S2|C|475
3JAN|1|S2|A|476
3JAN|1|S2|G|477

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S1

SRP9

Chain S4

SRP14

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8

Chain SJ

Ribosomal protein uS4

Chain SY

Ribosomal protein eS24