J5_3JAN_012

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCG*CGUGCAU*ACCUCGGGCCGAUC*GACGA

Length

60 nucleotides

Bulged bases

3JAN|1|S2|U|128, 3JAN|1|S2|C|129, 3JAN|1|S2|G|130, 3JAN|1|S2|C|131, 3JAN|1|S2|U|132, 3JAN|1|S2|C|133, 3JAN|1|S2|C|134, 3JAN|1|S2|U|135, 3JAN|1|S2|C|136, 3JAN|1|S2|U|137, 3JAN|1|S2|C|138, 3JAN|1|S2|C|139, 3JAN|1|S2|C|142, 3JAN|1|S2|G|183, 3JAN|1|S2|G|215, 3JAN|1|S2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|124
3JAN|1|S2|C|125
3JAN|1|S2|G|126
3JAN|1|S2|C|127
3JAN|1|S2|U|128
3JAN|1|S2|C|129
3JAN|1|S2|G|130
3JAN|1|S2|C|131
3JAN|1|S2|U|132
3JAN|1|S2|C|133
3JAN|1|S2|C|134
3JAN|1|S2|U|135
3JAN|1|S2|C|136
3JAN|1|S2|U|137
3JAN|1|S2|C|138
3JAN|1|S2|C|139
3JAN|1|S2|C|140
3JAN|1|S2|A|141
3JAN|1|S2|C|142
3JAN|1|S2|U|143
3JAN|1|S2|U|144
*
3JAN|1|S2|A|175
3JAN|1|S2|U|176
3JAN|1|S2|G|177
3JAN|1|S2|C|178
3JAN|1|S2|C|179
3JAN|1|S2|G|180
3JAN|1|S2|A|181
3JAN|1|S2|C|182
3JAN|1|S2|G|183
3JAN|1|S2|G|184
3JAN|1|S2|G|185
3JAN|1|S2|C|186
3JAN|1|S2|G|187
*
3JAN|1|S2|C|212
3JAN|1|S2|G|213
3JAN|1|S2|U|214
3JAN|1|S2|G|215
3JAN|1|S2|C|216
3JAN|1|S2|A|217
3JAN|1|S2|U|218
*
3JAN|1|S2|A|302
3JAN|1|S2|C|303
3JAN|1|S2|C|304
3JAN|1|S2|U|305
3JAN|1|S2|C|306
3JAN|1|S2|G|307
3JAN|1|S2|G|308
3JAN|1|S2|G|309
3JAN|1|S2|C|310
3JAN|1|S2|C|311
3JAN|1|S2|G|312
3JAN|1|S2|A|313
3JAN|1|S2|U|314
3JAN|1|S2|C|315
*
3JAN|1|S2|G|335
3JAN|1|S2|A|336
3JAN|1|S2|C|337
3JAN|1|S2|G|338
3JAN|1|S2|A|339

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8