J5_3JAN_013

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AUCUUGGGAGCG*CCCGCCG*CAUU*AUGGAAUAG*CAUGAU

Length

38 nucleotides

Bulged bases

3JAN|1|S2|A|869, 3JAN|1|S2|U|871, 3JAN|1|S2|A|913, 3JAN|1|S2|A|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|A|685
3JAN|1|S2|U|686
3JAN|1|S2|C|687
3JAN|1|S2|U|688
3JAN|1|S2|U|689
3JAN|1|S2|G|690
3JAN|1|S2|G|691
3JAN|1|S2|G|692
3JAN|1|S2|A|693
3JAN|1|S2|G|694
3JAN|1|S2|C|695
3JAN|1|S2|G|696
*
3JAN|1|S2|C|734
3JAN|1|S2|C|735
3JAN|1|S2|C|736
3JAN|1|S2|G|737
3JAN|1|S2|C|738
3JAN|1|S2|C|739
3JAN|1|S2|G|744
*
3JAN|1|S2|C|797
3JAN|1|S2|A|798
3JAN|1|S2|U|799
3JAN|1|S2|U|800
*
3JAN|1|S2|A|865
3JAN|1|S2|U|866
3JAN|1|S2|G|867
3JAN|1|S2|G|868
3JAN|1|S2|A|869
3JAN|1|S2|A|870
3JAN|1|S2|U|871
3JAN|1|S2|A|872
3JAN|1|S2|G|873
*
3JAN|1|S2|C|912
3JAN|1|S2|A|913
3JAN|1|S2|U|914
3JAN|1|S2|G|915
3JAN|1|S2|A|916
3JAN|1|S2|U|917

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain SH

Ribosomal protein eS7

Chain SL

Ribosomal protein uS17

Chain SN

Ribosomal protein uS15

Chain SW

Ribosomal protein uS8

Chain SX

Ribosomal protein uS12