J5_3JBN_010

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAACUAU*AGACUGAAGUG*CAA*UCUGGUUAAAU*AG

Length

34 nucleotides

Bulged bases

3JBN|1|AA|A|1601, 3JBN|1|AA|U|1604, 3JBN|1|AA|A|1631, 3JBN|1|AA|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|C|1600
3JBN|1|AA|A|1601
3JBN|1|AA|A|1602
3JBN|1|AA|C|1603
3JBN|1|AA|U|1604
3JBN|1|AA|A|1605
3JBN|1|AA|U|1606
*
3JBN|1|AA|A|1624
3JBN|1|AA|G|1625
3JBN|1|AA|A|1626
3JBN|1|AA|C|1627
3JBN|1|AA|U|1628
3JBN|1|AA|G|1629
3JBN|1|AA|A|1630
3JBN|1|AA|A|1631
3JBN|1|AA|G|1632
3JBN|1|AA|U|1633
3JBN|1|AA|G|1634
*
3JBN|1|AA|C|2124
3JBN|1|AA|A|2125
3JBN|1|AA|A|2126
*
3JBN|1|AA|U|2138
3JBN|1|AA|C|2139
3JBN|1|AA|U|2140
3JBN|1|AA|G|2141
3JBN|1|AA|G|2142
3JBN|1|AA|U|2143
3JBN|1|AA|U|2144
3JBN|1|AA|A|2145
3JBN|1|AA|A|2146
3JBN|1|AA|A|2147
3JBN|1|AA|U|2148
*
3JBN|1|AA|A|2645
3JBN|1|AA|G|2646

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22

Chain Aa

60S ribosomal protein eL34