J5_3JBN_012

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

3JBN|1|AA|A|2697, 3JBN|1|AA|A|3176, 3JBN|1|AA|U|3177, 3JBN|1|AA|C|3180, 3JBN|1|AA|U|3337, 3JBN|1|AA|U|3338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|A|2692
3JBN|1|AA|G|2693
3JBN|1|AA|A|2694
3JBN|1|AA|A|2695
3JBN|1|AA|G|2696
3JBN|1|AA|A|2697
3JBN|1|AA|C|2698
3JBN|1|AA|C|2699
*
3JBN|1|AA|G|3174
3JBN|1|AA|G|3175
3JBN|1|AA|A|3176
3JBN|1|AA|U|3177
3JBN|1|AA|A|3178
3JBN|1|AA|A|3179
3JBN|1|AA|C|3180
3JBN|1|AA|U|3181
3JBN|1|AA|G|3182
*
3JBN|1|AA|C|3226
3JBN|1|AA|U|3227
3JBN|1|AA|U|3228
3JBN|1|AA|C|3229
3JBN|1|AA|G|3230
3JBN|1|AA|A|3231
3JBN|1|AA|U|3232
3JBN|1|AA|G|3233
3JBN|1|AA|U|3234
3JBN|1|AA|C|3235
*
3JBN|1|AA|G|3310
3JBN|1|AA|G|3311
3JBN|1|AA|U|3312
3JBN|1|AA|U|3313
3JBN|1|AA|U|3314
3JBN|1|AA|A|3315
3JBN|1|AA|G|3316
*
3JBN|1|AA|U|3334
3JBN|1|AA|A|3335
3JBN|1|AA|G|3336
3JBN|1|AA|U|3337
3JBN|1|AA|U|3338
3JBN|1|AA|U|3339

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A4

60S ribosomal protein eL29

Chain AD

60S ribosomal protein uL2

Chain AE

60S ribosomal protein uL3

Chain AF

60S ribosomal protein uL4

Chain AW

60S ribosomal protein uL22