3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
ACAUUUAUAA*UUGCAU*AGUAU*AGAAGUA*UGUAU
Length
33 nucleotides
Bulged bases
3JBO|1|A|U|138
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBO|1|A|A|126
3JBO|1|A|C|127
3JBO|1|A|A|128
3JBO|1|A|U|129
3JBO|1|A|U|130
3JBO|1|A|U|136
3JBO|1|A|A|137
3JBO|1|A|U|138
3JBO|1|A|A|139
3JBO|1|A|A|140
*
3JBO|1|A|U|171
3JBO|1|A|U|172
3JBO|1|A|G|173
3JBO|1|A|C|174
3JBO|1|A|A|178
3JBO|1|A|U|179
*
3JBO|1|A|A|206
3JBO|1|A|G|207
3JBO|1|A|U|208
3JBO|1|A|A|209
3JBO|1|A|U|210
*
3JBO|1|A|A|260
3JBO|1|A|G|261
3JBO|1|A|A|262
3JBO|1|A|A|263
3JBO|1|A|G|264
3JBO|1|A|U|265
3JBO|1|A|A|266
*
3JBO|1|A|U|295
3JBO|1|A|G|296
3JBO|1|A|U|297
3JBO|1|A|A|298
3JBO|1|A|U|299

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain F
40S ribosomal protein eS4
Chain H
40S ribosomal protein eS6
Chain L
40S ribosomal protein eS8

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2018 s