J5_3JBO_006
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUUUCA*UUAAAA*UUUG*CAAAAUU*GAU
- Length
- 26 nucleotides
- Bulged bases
- 3JBO|1|A|U|646, 3JBO|1|A|C|647, 3JBO|1|A|U|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBO|1|A|A|643
3JBO|1|A|U|644
3JBO|1|A|U|645
3JBO|1|A|U|646
3JBO|1|A|C|647
3JBO|1|A|A|648
*
3JBO|1|A|U|752
3JBO|1|A|U|753
3JBO|1|A|A|754
3JBO|1|A|A|755
3JBO|1|A|A|756
3JBO|1|A|A|757
*
3JBO|1|A|U|790
3JBO|1|A|U|791
3JBO|1|A|U|792
3JBO|1|A|G|793
*
3JBO|1|A|C|871
3JBO|1|A|A|872
3JBO|1|A|A|873
3JBO|1|A|A|874
3JBO|1|A|A|875
3JBO|1|A|U|876
3JBO|1|A|U|877
*
3JBO|1|A|G|926
3JBO|1|A|A|927
3JBO|1|A|U|928
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein eL19
- Chain J
- 40S ribosomal protein eS7
- Chain K
- 40S ribosomal protein uS8
- Chain Q
- 40S ribosomal protein uS12
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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