J5_3JBO_009
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAAG*CAUAA*UAAUAUGUCCAU*AU*ACGAG
- Length
- 28 nucleotides
- Bulged bases
- 3JBO|1|AA|A|799, 3JBO|1|AA|U|810, 3JBO|1|AA|G|813, 3JBO|1|AA|U|817, 3JBO|1|AA|C|903, 3JBO|1|AA|G|904
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBO|1|AA|C|753
3JBO|1|AA|A|754
3JBO|1|AA|A|755
3JBO|1|AA|G|756
*
3JBO|1|AA|C|796
3JBO|1|AA|A|797
3JBO|1|AA|U|798
3JBO|1|AA|A|799
3JBO|1|AA|A|800
*
3JBO|1|AA|U|807
3JBO|1|AA|A|808
3JBO|1|AA|A|809
3JBO|1|AA|U|810
3JBO|1|AA|A|811
3JBO|1|AA|U|812
3JBO|1|AA|G|813
3JBO|1|AA|U|817
3JBO|1|AA|C|818
3JBO|1|AA|C|821
3JBO|1|AA|A|822
3JBO|1|AA|U|823
*
3JBO|1|AA|A|872
3JBO|1|AA|U|873
*
3JBO|1|AA|A|902
3JBO|1|AA|C|903
3JBO|1|AA|G|904
3JBO|1|AA|A|905
3JBO|1|AA|G|906
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 60S ribosomal protein eL29
- Chain AF
- 60S ribosomal protein uL4
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain AS
- 60S ribosomal protein eL18
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