Loop J5_3JBO

3D structure

PDB id: 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 3JBO|1|AA|A|2697, 3JBO|1|AA|A|3176, 3JBO|1|AA|U|3177, 3JBO|1|AA|U|3337, 3JBO|1|AA|U|3338
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JBO|1|AA|A|2692
3JBO|1|AA|G|2693
3JBO|1|AA|A|2694
3JBO|1|AA|A|2695
3JBO|1|AA|G|2696
3JBO|1|AA|A|2697
3JBO|1|AA|C|2698
3JBO|1|AA|C|2699
*
3JBO|1|AA|G|3174
3JBO|1|AA|G|3175
3JBO|1|AA|A|3176
3JBO|1|AA|U|3177
3JBO|1|AA|A|3178
3JBO|1|AA|A|3179
3JBO|1|AA|C|3180
3JBO|1|AA|U|3181
3JBO|1|AA|G|3182
*
3JBO|1|AA|C|3226
3JBO|1|AA|U|3227
3JBO|1|AA|U|3228
3JBO|1|AA|C|3229
3JBO|1|AA|G|3230
3JBO|1|AA|A|3231
3JBO|1|AA|U|3232
3JBO|1|AA|G|3233
3JBO|1|AA|U|3234
3JBO|1|AA|C|3235
*
3JBO|1|AA|G|3310
3JBO|1|AA|G|3311
3JBO|1|AA|U|3312
3JBO|1|AA|U|3313
3JBO|1|AA|U|3314
3JBO|1|AA|A|3315
3JBO|1|AA|G|3316
*
3JBO|1|AA|U|3334
3JBO|1|AA|A|3335
3JBO|1|AA|G|3336
3JBO|1|AA|U|3337
3JBO|1|AA|U|3338
3JBO|1|AA|U|3339

Current chains

Chain AA: 28S ribosomal RNA

Nearby chains

Chain A4: 60S ribosomal protein eL29
Chain AD: 60S ribosomal protein uL2
Chain AE: 60S ribosomal protein uL3
Chain AF: 60S ribosomal protein uL4

J5_3JBO_012