J5_3JBP_004
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- ACAUUUAUAA*UUGCAU*AGUAU*AGAAGUA*UGUAU
- Length
- 33 nucleotides
- Bulged bases
- 3JBP|1|A|U|138, 3JBP|1|A|A|139
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBP|1|A|A|126
3JBP|1|A|C|127
3JBP|1|A|A|128
3JBP|1|A|U|129
3JBP|1|A|U|130
3JBP|1|A|U|136
3JBP|1|A|A|137
3JBP|1|A|U|138
3JBP|1|A|A|139
3JBP|1|A|A|140
*
3JBP|1|A|U|171
3JBP|1|A|U|172
3JBP|1|A|G|173
3JBP|1|A|C|174
3JBP|1|A|A|178
3JBP|1|A|U|179
*
3JBP|1|A|A|206
3JBP|1|A|G|207
3JBP|1|A|U|208
3JBP|1|A|A|209
3JBP|1|A|U|210
*
3JBP|1|A|A|260
3JBP|1|A|G|261
3JBP|1|A|A|262
3JBP|1|A|A|263
3JBP|1|A|G|264
3JBP|1|A|U|265
3JBP|1|A|A|266
*
3JBP|1|A|U|295
3JBP|1|A|G|296
3JBP|1|A|U|297
3JBP|1|A|A|298
3JBP|1|A|U|299
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein eS4
- Chain H
- 40S ribosomal protein eS6
- Chain L
- 40S ribosomal protein eS8
Coloring options: