J5_3JBP_007
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GGG*CGAUGAAG*UGAAUG*CA*UAC
- Length
- 22 nucleotides
- Bulged bases
- 3JBP|1|AC|U|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBP_007 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1511
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JBP|1|AA|G|20
3JBP|1|AA|G|21
3JBP|1|AA|G|22
*
3JBP|1|AC|C|39
3JBP|1|AC|G|40
3JBP|1|AC|A|41
3JBP|1|AC|U|42
3JBP|1|AC|G|43
3JBP|1|AC|A|44
3JBP|1|AC|A|45
3JBP|1|AC|G|46
*
3JBP|1|AC|U|105
3JBP|1|AC|G|106
3JBP|1|AC|A|107
3JBP|1|AC|A|108
3JBP|1|AC|U|109
3JBP|1|AC|G|110
*
3JBP|1|AC|C|118
3JBP|1|AC|A|119
*
3JBP|1|AC|U|144
3JBP|1|AC|A|145
3JBP|1|AC|C|146
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein uL29
- Chain AP
- 60S ribosomal protein eL15
- Chain AY
- 60S ribosomal protein uL23
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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