J5_3JBP_008
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUA*UC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 3JBP|1|AA|U|1585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBP_008 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1053
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
3JBP|1|AA|G|736
3JBP|1|AA|G|737
3JBP|1|AA|A|738
3JBP|1|AA|G|739
3JBP|1|AA|U|740
3JBP|1|AA|C|741
*
3JBP|1|AA|G|918
3JBP|1|AA|G|919
3JBP|1|AA|A|920
3JBP|1|AA|C|921
*
3JBP|1|AA|G|1060
3JBP|1|AA|U|1061
3JBP|1|AA|U|1062
3JBP|1|AA|A|1063
*
3JBP|1|AA|U|1524
3JBP|1|AA|C|1525
*
3JBP|1|AA|G|1580
3JBP|1|AA|C|1581
3JBP|1|AA|A|1582
3JBP|1|AA|G|1583
3JBP|1|AA|A|1584
3JBP|1|AA|U|1585
3JBP|1|AA|C|1586
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein eL28
- Chain A8
- 60S ribosomal protein eL32
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein uL4
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
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