J5_3JBP_011
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 3JBP|1|AA|G|2409, 3JBP|1|AA|G|2414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBP_011 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1183
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBP|1|AA|G|2174
3JBP|1|AA|C|2175
3JBP|1|AA|A|2176
3JBP|1|AA|A|2177
3JBP|1|AA|A|2178
3JBP|1|AA|A|2179
3JBP|1|AA|U|2180
3JBP|1|AA|A|2181
3JBP|1|AA|G|2182
*
3JBP|1|AA|U|2206
3JBP|1|AA|G|2207
*
3JBP|1|AA|U|2402
3JBP|1|AA|G|2403
*
3JBP|1|AA|C|2407
3JBP|1|AA|G|2408
3JBP|1|AA|G|2409
3JBP|1|AA|A|2410
3JBP|1|AA|C|2411
3JBP|1|AA|A|2412
3JBP|1|AA|A|2413
3JBP|1|AA|G|2414
3JBP|1|AA|G|2415
*
3JBP|1|AA|C|2624
3JBP|1|AA|A|2625
3JBP|1|AA|C|2626
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- 60S ribosomal protein eL24
- Chain AE
- 60S ribosomal protein uL3
- Chain AM
- 60S ribosomal protein uL14
- Chain AT
- 60S ribosomal protein eL19
Coloring options: