J5_3JBP_012

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

3JBP|1|AA|A|2697, 3JBP|1|AA|A|3176, 3JBP|1|AA|U|3177, 3JBP|1|AA|C|3180, 3JBP|1|AA|U|3337, 3JBP|1|AA|U|3338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBP|1|AA|A|2692
3JBP|1|AA|G|2693
3JBP|1|AA|A|2694
3JBP|1|AA|A|2695
3JBP|1|AA|G|2696
3JBP|1|AA|A|2697
3JBP|1|AA|C|2698
3JBP|1|AA|C|2699
*
3JBP|1|AA|G|3174
3JBP|1|AA|G|3175
3JBP|1|AA|A|3176
3JBP|1|AA|U|3177
3JBP|1|AA|A|3178
3JBP|1|AA|A|3179
3JBP|1|AA|C|3180
3JBP|1|AA|U|3181
3JBP|1|AA|G|3182
*
3JBP|1|AA|C|3226
3JBP|1|AA|U|3227
3JBP|1|AA|U|3228
3JBP|1|AA|C|3229
3JBP|1|AA|G|3230
3JBP|1|AA|A|3231
3JBP|1|AA|U|3232
3JBP|1|AA|G|3233
3JBP|1|AA|U|3234
3JBP|1|AA|C|3235
*
3JBP|1|AA|G|3310
3JBP|1|AA|G|3311
3JBP|1|AA|U|3312
3JBP|1|AA|U|3313
3JBP|1|AA|U|3314
3JBP|1|AA|A|3315
3JBP|1|AA|G|3316
*
3JBP|1|AA|U|3334
3JBP|1|AA|A|3335
3JBP|1|AA|G|3336
3JBP|1|AA|U|3337
3JBP|1|AA|U|3338
3JBP|1|AA|U|3339

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AD

60S ribosomal protein uL2

Chain AE

60S ribosomal protein uL3

Chain AF

60S ribosomal protein uL4

Chain AW

60S ribosomal protein uL22