J5_3JBP_013
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UUUA*UUUG*CA*UG*CUGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 3JBP|1|AA|U|2711, 3JBP|1|AA|U|3158, 3JBP|1|AA|G|3159, 3JBP|1|AA|A|3160, 3JBP|1|AA|A|3161, 3JBP|1|AA|A|3162
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JBP_013 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2558
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JBP|1|AA|U|2709
3JBP|1|AA|U|2710
3JBP|1|AA|U|2711
3JBP|1|AA|A|2712
*
3JBP|1|AA|U|2950
3JBP|1|AA|U|2951
3JBP|1|AA|U|2952
3JBP|1|AA|G|2953
*
3JBP|1|AA|C|2966
3JBP|1|AA|A|2967
*
3JBP|1|AA|U|2989
3JBP|1|AA|G|2990
*
3JBP|1|AA|C|3157
3JBP|1|AA|U|3158
3JBP|1|AA|G|3159
3JBP|1|AA|A|3160
3JBP|1|AA|A|3161
3JBP|1|AA|A|3162
3JBP|1|AA|A|3163
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain A4
- 60S ribosomal protein eL29
- Chain AD
- 60S ribosomal protein uL2
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain AS
- 60S ribosomal protein eL18
- Chain AV
- 60S ribosomal protein eL21
- Chain Ai
- 60S ribosomal protein eL44
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