J5_3JBU_012
3D structure
- PDB id
- 3JBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- GAAAGACCCCG*CGGGGAUAACAG*CCUCGAUGUCG*UGGGUUUAG*CGGUCC
- Length
- 49 nucleotides
- Bulged bases
- 3JBU|1|b|A|2062, 3JBU|1|b|A|2448, 3JBU|1|b|U|2585, 3JBU|1|b|U|2609, 3JBU|1|b|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBU|1|b|G|2057
3JBU|1|b|A|2058
3JBU|1|b|A|2059
3JBU|1|b|A|2060
3JBU|1|b|G|2061
3JBU|1|b|A|2062
3JBU|1|b|C|2063
3JBU|1|b|C|2064
3JBU|1|b|C|2065
3JBU|1|b|C|2066
3JBU|1|b|G|2067
*
3JBU|1|b|C|2443
3JBU|1|b|G|2444
3JBU|1|b|G|2445
3JBU|1|b|G|2446
3JBU|1|b|G|2447
3JBU|1|b|A|2448
3JBU|1|b|U|2449
3JBU|1|b|A|2450
3JBU|1|b|A|2451
3JBU|1|b|C|2452
3JBU|1|b|A|2453
3JBU|1|b|G|2454
*
3JBU|1|b|C|2498
3JBU|1|b|C|2499
3JBU|1|b|U|2500
3JBU|1|b|C|2501
3JBU|1|b|G|2502
3JBU|1|b|A|2503
3JBU|1|b|U|2504
3JBU|1|b|G|2505
3JBU|1|b|U|2506
3JBU|1|b|C|2507
3JBU|1|b|G|2508
*
3JBU|1|b|U|2580
3JBU|1|b|G|2581
3JBU|1|b|G|2582
3JBU|1|b|G|2583
3JBU|1|b|U|2584
3JBU|1|b|U|2585
3JBU|1|b|U|2586
3JBU|1|b|A|2587
3JBU|1|b|G|2588
*
3JBU|1|b|C|2606
3JBU|1|b|G|2607
3JBU|1|b|G|2608
3JBU|1|b|U|2609
3JBU|1|b|C|2610
3JBU|1|b|C|2611
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L22
- Chain v
- Transfer RNA; tRNA
- Chain z
- SecM-glycine
Coloring options: