J5_3JBV_008
3D structure
- PDB id
- 3JBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.32 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 3JBV|1|b|A|2062, 3JBV|1|b|A|2448, 3JBV|1|b|U|2506, 3JBV|1|b|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JBV|1|b|G|2057
3JBV|1|b|A|2058
3JBV|1|b|A|2059
3JBV|1|b|A|2060
3JBV|1|b|G|2061
3JBV|1|b|A|2062
3JBV|1|b|C|2063
3JBV|1|b|C|2064
*
3JBV|1|b|G|2446
3JBV|1|b|G|2447
3JBV|1|b|A|2448
3JBV|1|b|U|2449
3JBV|1|b|A|2450
3JBV|1|b|A|2451
3JBV|1|b|C|2452
3JBV|1|b|A|2453
3JBV|1|b|G|2454
*
3JBV|1|b|C|2498
3JBV|1|b|C|2499
3JBV|1|b|U|2500
3JBV|1|b|C|2501
3JBV|1|b|G|2502
3JBV|1|b|A|2503
3JBV|1|b|U|2504
3JBV|1|b|G|2505
3JBV|1|b|U|2506
3JBV|1|b|C|2507
*
3JBV|1|b|G|2582
3JBV|1|b|G|2583
3JBV|1|b|U|2584
3JBV|1|b|U|2585
3JBV|1|b|U|2586
3JBV|1|b|A|2587
3JBV|1|b|G|2588
*
3JBV|1|b|C|2606
3JBV|1|b|G|2607
3JBV|1|b|G|2608
3JBV|1|b|U|2609
3JBV|1|b|C|2610
3JBV|1|b|C|2611
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain V
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L11
- Chain e
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L22
- Chain z
- Secretion monitor
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