J5_3JCD_008

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

3JCD|1|a|A|109, 3JCD|1|a|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JCD_008 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1362

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JCD|1|a|C|58
3JCD|1|a|A|59
3JCD|1|a|A|60
3JCD|1|a|G|61
*
3JCD|1|a|C|106
3JCD|1|a|G|107
3JCD|1|a|G|108
3JCD|1|a|A|109
3JCD|1|a|C|110
3JCD|1|a|G|111
3JCD|1|a|G|112
3JCD|1|a|G|113
*
3JCD|1|a|C|314
3JCD|1|a|A|315
3JCD|1|a|C|316
*
3JCD|1|a|G|337
3JCD|1|a|A|338
3JCD|1|a|C|339
*
3JCD|1|a|G|350
3JCD|1|a|G|351
3JCD|1|a|C|352
3JCD|1|a|A|353
3JCD|1|a|G|354

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20