J5_3JCJ_007
3D structure
- PDB id
- 3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JCJ_007 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0905
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3JCJ|1|g|C|36
3JCJ|1|g|U|37
3JCJ|1|g|G|38
3JCJ|1|g|G|39
*
3JCJ|1|g|C|403
3JCJ|1|g|G|404
3JCJ|1|g|U|405
3JCJ|1|g|G|406
*
3JCJ|1|g|C|436
3JCJ|1|g|U|437
3JCJ|1|g|U|438
3JCJ|1|g|U|439
3JCJ|1|g|C|440
3JCJ|1|g|A|441
3JCJ|1|g|G|442
*
3JCJ|1|g|C|492
3JCJ|1|g|A|493
3JCJ|1|g|G|494
3JCJ|1|g|A|495
3JCJ|1|g|A|496
3JCJ|1|g|G|497
3JCJ|1|g|A|498
3JCJ|1|g|A|499
3JCJ|1|g|G|500
*
3JCJ|1|g|C|545
3JCJ|1|g|A|546
3JCJ|1|g|A|547
3JCJ|1|g|G|548
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain f
- Translation initiation factor IF-2
- Chain l
- 30S ribosomal protein S4
- Chain t
- 30S ribosomal protein S12
Coloring options: