3D structure

PDB id
3JCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGUCC
Length
38 nucleotides
Bulged bases
3JCJ|1|A|A|2062, 3JCJ|1|A|A|2448, 3JCJ|1|A|U|2449, 3JCJ|1|A|U|2585, 3JCJ|1|A|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JCJ|1|A|G|2057
3JCJ|1|A|A|2058
3JCJ|1|A|A|2059
3JCJ|1|A|A|2060
3JCJ|1|A|G|2061
3JCJ|1|A|A|2062
3JCJ|1|A|C|2063
3JCJ|1|A|C|2064
*
3JCJ|1|A|G|2446
3JCJ|1|A|G|2447
3JCJ|1|A|A|2448
3JCJ|1|A|U|2449
3JCJ|1|A|A|2450
3JCJ|1|A|A|2451
3JCJ|1|A|C|2452
3JCJ|1|A|A|2453
3JCJ|1|A|G|2454
*
3JCJ|1|A|C|2498
3JCJ|1|A|C|2499
3JCJ|1|A|U|2500
3JCJ|1|A|C|2501
3JCJ|1|A|G|2502
3JCJ|1|A|A|2503
3JCJ|1|A|U|2504
3JCJ|1|A|G|2505
3JCJ|1|A|U|2506
*
3JCJ|1|A|G|2583
3JCJ|1|A|U|2584
3JCJ|1|A|U|2585
3JCJ|1|A|U|2586
3JCJ|1|A|A|2587
3JCJ|1|A|G|2588
*
3JCJ|1|A|C|2606
3JCJ|1|A|G|2607
3JCJ|1|A|G|2608
3JCJ|1|A|U|2609
3JCJ|1|A|C|2610
3JCJ|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain C
50S ribosomal protein L3
Chain D
50S ribosomal protein L4
Chain K
50S ribosomal protein L15
Chain L
50S ribosomal protein L16
Chain R
50S ribosomal protein L22
Chain Z
50S ribosomal protein L32

Coloring options:

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