J5_3JCS_002
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUCA*UGGC*GCA(OMG)AU(OMC)
- Length
- 26 nucleotides
- Bulged bases
- 3JCS|1|1|G|1466, 3JCS|1|1|U|1528
- QA status
- Modified nucleotides: OMC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|1|G|690
3JCS|1|1|G|691
3JCS|1|1|A|692
3JCS|1|1|G|693
3JCS|1|1|U|694
3JCS|1|1|OMC|695
*
3JCS|1|1|G|850
3JCS|1|1|G|851
3JCS|1|1|A|852
3JCS|1|1|C|853
*
3JCS|1|1|G|992
3JCS|1|1|U|993
3JCS|1|1|U|994
3JCS|1|1|C|995
3JCS|1|1|A|996
*
3JCS|1|1|U|1465
3JCS|1|1|G|1466
3JCS|1|1|G|1467
3JCS|1|1|C|1468
*
3JCS|1|1|G|1523
3JCS|1|1|C|1524
3JCS|1|1|A|1525
3JCS|1|1|OMG|1526
3JCS|1|1|A|1527
3JCS|1|1|U|1528
3JCS|1|1|OMC|1529
Current chains
- Chain 1
- 26S alpha ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- ribosomal protein L4
- Chain I
- ribosomal protein L13e
- Chain L
- ribosomal protein L15
- Chain M
- ribosomal protein L15e
- Chain P
- ribosomal protein L18e
- Chain Z
- ribosomal protein L28e
- Chain f
- ribosomal protein L32e
Coloring options: