J5_3JCS_003
3D structure
- PDB id
- 3JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUUCGAUGUC*GGUUUAG*UGGUUU
- Length
- 40 nucleotides
- Bulged bases
- 3JCS|1|2|A|1256, 3JCS|1|2|U|1257, 3JCS|1|2|U|1312, 3JCS|1|2|G|1313
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCS|1|2|A|645
3JCS|1|2|G|646
3JCS|1|2|A|647
3JCS|1|2|A|648
3JCS|1|2|G|649
3JCS|1|2|A|650
3JCS|1|2|C|651
3JCS|1|2|C|652
*
3JCS|1|2|OMG|1254
3JCS|1|2|G|1255
3JCS|1|2|A|1256
3JCS|1|2|U|1257
3JCS|1|2|A|1258
3JCS|1|2|A|1259
3JCS|1|2|C|1260
3JCS|1|2|U|1261
3JCS|1|2|G|1262
*
3JCS|1|2|C|1306
3JCS|1|2|U|1307
3JCS|1|2|U|1308
3JCS|1|2|C|1309
3JCS|1|2|G|1310
3JCS|1|2|A|1311
3JCS|1|2|U|1312
3JCS|1|2|G|1313
3JCS|1|2|U|1314
3JCS|1|2|C|1315
*
3JCS|1|2|G|1390
3JCS|1|2|G|1391
3JCS|1|2|U|1392
3JCS|1|2|U|1393
3JCS|1|2|U|1394
3JCS|1|2|A|1395
3JCS|1|2|G|1396
*
3JCS|1|2|U|1414
3JCS|1|2|G|1415
3JCS|1|2|G|1416
3JCS|1|2|U|1417
3JCS|1|2|U|1418
3JCS|1|2|U|1419
Current chains
- Chain 2
- 26S delta ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- ribosomal protein L2
- Chain B
- ribosomal protein L3
- Chain C
- ribosomal protein L4
- Chain L
- ribosomal protein L15
- Chain N
- ribosomal protein L16
- Chain T
- ribosomal protein L22
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