J5_3OW2_005

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CACAG*CGACAUG*CGC*GGGAG

Length

24 nucleotides

Bulged bases

3OW2|1|0|A|700, 3OW2|1|0|G|745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3OW2_005 not in the Motif Atlas

Homologous match to J5_4V9F_005

Geometric discrepancy: 0.0416

The information below is about J5_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_26867.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-cWW-cWW-cHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3OW2|1|0|C|658
3OW2|1|0|A|659
3OW2|1|0|A|660
3OW2|1|0|G|661
*
3OW2|1|0|C|685
3OW2|1|0|A|686
3OW2|1|0|C|687
3OW2|1|0|A|688
3OW2|1|0|G|689
*
3OW2|1|0|C|696
3OW2|1|0|G|697
3OW2|1|0|A|698
3OW2|1|0|C|699
3OW2|1|0|A|700
3OW2|1|0|U|701
3OW2|1|0|G|702
*
3OW2|1|0|C|726
3OW2|1|0|G|727
3OW2|1|0|C|728
*
3OW2|1|0|G|743
3OW2|1|0|G|744
3OW2|1|0|G|745
3OW2|1|0|A|746
3OW2|1|0|G|747

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain K

50S ribosomal protein L15P

Chain N

50S ribosomal protein L18e