J5_3OW2_006

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAGUUAG*UG*UC*GUGACUCGG*CAC

Length

25 nucleotides

Bulged bases

3OW2|1|0|G|1814, 3OW2|1|0|G|1819

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3OW2_006 not in the Motif Atlas

Homologous match to J5_4V9F_006

Geometric discrepancy: 0.046

The information below is about J5_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3OW2|1|0|G|1752
3OW2|1|0|C|1753
3OW2|1|0|A|1754
3OW2|1|0|A|1755
3OW2|1|0|G|1756
3OW2|1|0|U|1757
3OW2|1|0|U|1758
3OW2|1|0|A|1759
3OW2|1|0|G|1760
*
3OW2|1|0|U|1784
3OW2|1|0|G|1785
*
3OW2|1|0|U|1807
3OW2|1|0|C|1808
*
3OW2|1|0|G|1812
3OW2|1|0|U|1813
3OW2|1|0|G|1814
3OW2|1|0|A|1815
3OW2|1|0|C|1816
3OW2|1|0|U|1817
3OW2|1|0|C|1818
3OW2|1|0|G|1819
3OW2|1|0|G|1820
*
3OW2|1|0|C|2029
3OW2|1|0|A|2030
3OW2|1|0|C|2031

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P

Chain O

50S ribosomal protein L19e