J5_3PIO_001

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCGAUGAAG*CGAAUG*CA*UAUC*GAUGG

Length

26 nucleotides

Bulged bases

3PIO|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|C|45
3PIO|1|X|C|46
3PIO|1|X|G|47
3PIO|1|X|A|48
3PIO|1|X|U|49
3PIO|1|X|G|50
3PIO|1|X|A|51
3PIO|1|X|A|52
3PIO|1|X|G|53
*
3PIO|1|X|C|114
3PIO|1|X|G|115
3PIO|1|X|A|116
3PIO|1|X|A|117
3PIO|1|X|U|118
3PIO|1|X|G|119
*
3PIO|1|X|C|128
3PIO|1|X|A|129
*
3PIO|1|X|U|142
3PIO|1|X|A|143
3PIO|1|X|U|144
3PIO|1|X|C|145
*
3PIO|1|X|G|152
3PIO|1|X|A|153
3PIO|1|X|U|154
3PIO|1|X|G|155
3PIO|1|X|G|156

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23