J5_3PIO_008

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

ACGAAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCUCUAU

Length

44 nucleotides

Bulged bases

3PIO|1|X|C|2038, 3PIO|1|X|A|2427, 3PIO|1|X|U|2428, 3PIO|1|X|U|2564, 3PIO|1|X|U|2588, 3PIO|1|X|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|A|2037
3PIO|1|X|C|2038
3PIO|1|X|G|2039
3PIO|1|X|A|2040
3PIO|1|X|A|2041
3PIO|1|X|A|2042
3PIO|1|X|A|2043
3PIO|1|X|G|2044
3PIO|1|X|A|2045
3PIO|1|X|C|2046
3PIO|1|X|C|2047
*
3PIO|1|X|G|2425
3PIO|1|X|G|2426
3PIO|1|X|A|2427
3PIO|1|X|U|2428
3PIO|1|X|A|2429
3PIO|1|X|A|2430
3PIO|1|X|C|2431
3PIO|1|X|A|2432
*
3PIO|1|X|U|2479
3PIO|1|X|C|2480
3PIO|1|X|G|2481
3PIO|1|X|A|2482
3PIO|1|X|U|2483
3PIO|1|X|G|2484
3PIO|1|X|U|2485
3PIO|1|X|C|2486
*
3PIO|1|X|G|2561
3PIO|1|X|G|2562
3PIO|1|X|U|2563
3PIO|1|X|U|2564
3PIO|1|X|C|2565
3PIO|1|X|A|2566
3PIO|1|X|G|2567
*
3PIO|1|X|C|2585
3PIO|1|X|G|2586
3PIO|1|X|G|2587
3PIO|1|X|U|2588
3PIO|1|X|C|2589
3PIO|1|X|U|2590
3PIO|1|X|C|2591
3PIO|1|X|U|2592
3PIO|1|X|A|2593
3PIO|1|X|U|2594

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32