J5_3R8O_003

3D structure

PDB id

3R8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

3R8O|1|A|A|109, 3R8O|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3R8O_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.2187

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3R8O|1|A|C|58
3R8O|1|A|A|59
3R8O|1|A|A|60
3R8O|1|A|G|61
*
3R8O|1|A|C|106
3R8O|1|A|G|107
3R8O|1|A|G|108
3R8O|1|A|A|109
3R8O|1|A|C|110
3R8O|1|A|G|111
3R8O|1|A|G|112
3R8O|1|A|G|113
*
3R8O|1|A|C|314
3R8O|1|A|A|315
3R8O|1|A|C|316
*
3R8O|1|A|G|337
3R8O|1|A|A|338
3R8O|1|A|C|339
*
3R8O|1|A|G|350
3R8O|1|A|G|351
3R8O|1|A|C|352
3R8O|1|A|A|353
3R8O|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20