J5_3T1Y_002

3D structure

PDB id

3T1Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

3T1Y|1|A|A|102, 3T1Y|1|A|C|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3T1Y_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0569

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3T1Y|1|A|C|58
3T1Y|1|A|A|59
3T1Y|1|A|A|60
3T1Y|1|A|G|61
*
3T1Y|1|A|C|99
3T1Y|1|A|G|100
3T1Y|1|A|G|101
3T1Y|1|A|A|102
3T1Y|1|A|C|103
3T1Y|1|A|G|104
3T1Y|1|A|G|105
3T1Y|1|A|G|106
*
3T1Y|1|A|C|309
3T1Y|1|A|A|310
3T1Y|1|A|G|311
*
3T1Y|1|A|C|332
3T1Y|1|A|A|333
3T1Y|1|A|C|334
*
3T1Y|1|A|G|345
3T1Y|1|A|G|346
3T1Y|1|A|C|347
3T1Y|1|A|A|348
3T1Y|1|A|G|349

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20