J5_4A2I_001

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4A2I_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0744

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4A2I|1|A|C|36
4A2I|1|A|U|37
4A2I|1|A|G|38
4A2I|1|A|G|39
*
4A2I|1|A|C|403
4A2I|1|A|G|404
4A2I|1|A|U|405
4A2I|1|A|G|406
*
4A2I|1|A|C|436
4A2I|1|A|U|437
4A2I|1|A|U|438
4A2I|1|A|U|439
4A2I|1|A|C|440
*
4A2I|1|A|G|497
4A2I|1|A|A|498
4A2I|1|A|A|499
4A2I|1|A|G|500
*
4A2I|1|A|C|545
4A2I|1|A|A|546
4A2I|1|A|A|547
4A2I|1|A|G|548

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain L

30S RIBOSOMAL PROTEIN S12