J5_4A2I_002
3D structure
- PDB id
- 4A2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 16.5 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4A2I_002 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0887
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4A2I|1|A|C|36
4A2I|1|A|U|37
4A2I|1|A|G|38
4A2I|1|A|G|39
*
4A2I|1|A|C|403
4A2I|1|A|G|404
4A2I|1|A|U|405
4A2I|1|A|G|406
*
4A2I|1|A|C|436
4A2I|1|A|U|437
4A2I|1|A|U|438
4A2I|1|A|U|439
4A2I|1|A|C|440
4A2I|1|A|A|441
4A2I|1|A|G|442
*
4A2I|1|A|C|492
4A2I|1|A|A|493
4A2I|1|A|G|494
4A2I|1|A|A|495
4A2I|1|A|A|496
4A2I|1|A|G|497
4A2I|1|A|A|498
4A2I|1|A|A|499
4A2I|1|A|G|500
*
4A2I|1|A|C|545
4A2I|1|A|A|546
4A2I|1|A|A|547
4A2I|1|A|G|548
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
Coloring options: