3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
4ADV|1|A|A|109, 4ADV|1|A|C|352, 4ADV|1|A|A|353
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4ADV_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0872
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4ADV|1|A|C|58
4ADV|1|A|A|59
4ADV|1|A|A|60
4ADV|1|A|G|61
*
4ADV|1|A|C|106
4ADV|1|A|G|107
4ADV|1|A|G|108
4ADV|1|A|A|109
4ADV|1|A|C|110
4ADV|1|A|G|111
4ADV|1|A|G|112
4ADV|1|A|G|113
*
4ADV|1|A|C|314
4ADV|1|A|A|315
4ADV|1|A|C|316
*
4ADV|1|A|G|337
4ADV|1|A|A|338
4ADV|1|A|C|339
*
4ADV|1|A|G|350
4ADV|1|A|G|351
4ADV|1|A|C|352
4ADV|1|A|A|353
4ADV|1|A|G|354

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain P
30S RIBOSOMAL PROTEIN S16
Chain T
30S RIBOSOMAL PROTEIN S20

Coloring options:


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