3D structure

PDB id
4B3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 30S ribosome in complex with compound 1
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4B3M_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0641
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4B3M|1|A|C|36
4B3M|1|A|U|37
4B3M|1|A|G|38
4B3M|1|A|G|39
*
4B3M|1|A|C|403
4B3M|1|A|U|404
4B3M|1|A|U|405
4B3M|1|A|G|406
*
4B3M|1|A|C|436
4B3M|1|A|U|437
4B3M|1|A|G|438
4B3M|1|A|A|439
4B3M|1|A|A|441
4B3M|1|A|C|442
*
4B3M|1|A|G|492
4B3M|1|A|G|493
4B3M|1|A|U|494
4B3M|1|A|A|495
4B3M|1|A|A|496
4B3M|1|A|U|498
4B3M|1|A|A|499
4B3M|1|A|G|500
*
4B3M|1|A|C|545
4B3M|1|A|G|546
4B3M|1|A|A|547
4B3M|1|A|G|548

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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