3D structure

PDB id
4B3R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 30S ribosome in complex with compound 30
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4B3R_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0697
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4B3R|1|A|C|36
4B3R|1|A|U|37
4B3R|1|A|G|38
4B3R|1|A|G|39
*
4B3R|1|A|C|403
4B3R|1|A|U|404
4B3R|1|A|U|405
4B3R|1|A|G|406
*
4B3R|1|A|C|436
4B3R|1|A|U|437
4B3R|1|A|G|438
4B3R|1|A|A|439
4B3R|1|A|A|441
4B3R|1|A|C|442
*
4B3R|1|A|G|492
4B3R|1|A|G|493
4B3R|1|A|U|494
4B3R|1|A|A|495
4B3R|1|A|A|496
4B3R|1|A|U|498
4B3R|1|A|A|499
4B3R|1|A|G|500
*
4B3R|1|A|C|545
4B3R|1|A|G|546
4B3R|1|A|A|547
4B3R|1|A|G|548

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain D
30S RIBOSOMAL PROTEIN S4
Chain L
30S RIBOSOMAL PROTEIN S12

Coloring options:


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