J5_4B3T_002

3D structure

PDB id

4B3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 39

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4B3T|1|A|A|109, 4B3T|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4B3T_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0494

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4B3T|1|A|C|58
4B3T|1|A|A|59
4B3T|1|A|A|60
4B3T|1|A|G|61
*
4B3T|1|A|C|106
4B3T|1|A|G|107
4B3T|1|A|G|108
4B3T|1|A|A|109
4B3T|1|A|C|110
4B3T|1|A|G|111
4B3T|1|A|G|112
4B3T|1|A|G|113
*
4B3T|1|A|C|314
4B3T|1|A|A|315
4B3T|1|A|G|316
*
4B3T|1|A|C|337
4B3T|1|A|A|338
4B3T|1|A|C|339
*
4B3T|1|A|G|350
4B3T|1|A|G|351
4B3T|1|A|C|352
4B3T|1|A|A|353
4B3T|1|A|G|354

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20