J5_4CUV_005

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

4CUV|1|1|A|2817, 4CUV|1|1|U|2954, 4CUV|1|1|U|2978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUV|1|1|A|2399
4CUV|1|1|G|2400
4CUV|1|1|A|2401
4CUV|1|1|A|2402
4CUV|1|1|G|2403
4CUV|1|1|A|2404
4CUV|1|1|C|2405
4CUV|1|1|C|2406
*
4CUV|1|1|G|2815
4CUV|1|1|G|2816
4CUV|1|1|A|2817
4CUV|1|1|U|2818
4CUV|1|1|A|2819
4CUV|1|1|A|2820
4CUV|1|1|C|2821
4CUV|1|1|U|2822
4CUV|1|1|G|2823
*
4CUV|1|1|C|2867
4CUV|1|1|U|2868
4CUV|1|1|U|2869
4CUV|1|1|C|2870
4CUV|1|1|G|2871
4CUV|1|1|A|2872
4CUV|1|1|U|2873
4CUV|1|1|G|2874
4CUV|1|1|U|2875
4CUV|1|1|C|2876
*
4CUV|1|1|G|2951
4CUV|1|1|G|2952
4CUV|1|1|U|2953
4CUV|1|1|U|2954
4CUV|1|1|U|2955
4CUV|1|1|A|2956
4CUV|1|1|G|2957
*
4CUV|1|1|U|2975
4CUV|1|1|A|2976
4CUV|1|1|G|2977
4CUV|1|1|U|2978
4CUV|1|1|U|2979
4CUV|1|1|U|2980

Current chains

Chain 1

25S RRNA

Nearby chains