J5_4CUX_002

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUGUCUCAAA*UGACAAUAAAUAACGAUA*UAAUUGGAAUGAG*CGAGGAACAAU*AUAG

Length

57 nucleotides

Bulged bases

4CUX|1|2|A|506, 4CUX|1|2|U|507, 4CUX|1|2|A|541, 4CUX|1|2|C|543, 4CUX|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUX|1|2|C|31
4CUX|1|2|U|32
4CUX|1|2|U|33
4CUX|1|2|G|34
4CUX|1|2|U|35
4CUX|1|2|C|36
4CUX|1|2|U|37
4CUX|1|2|C|38
4CUX|1|2|A|39
4CUX|1|2|A|40
4CUX|1|2|A|41
*
4CUX|1|2|U|466
4CUX|1|2|G|467
4CUX|1|2|A|468
4CUX|1|2|C|469
4CUX|1|2|A|470
4CUX|1|2|A|471
4CUX|1|2|U|472
4CUX|1|2|A|473
4CUX|1|2|A|474
4CUX|1|2|A|475
4CUX|1|2|U|476
4CUX|1|2|A|477
4CUX|1|2|A|478
4CUX|1|2|C|479
4CUX|1|2|G|480
4CUX|1|2|A|481
4CUX|1|2|U|482
4CUX|1|2|A|483
*
4CUX|1|2|U|504
4CUX|1|2|A|505
4CUX|1|2|A|506
4CUX|1|2|U|507
4CUX|1|2|U|508
4CUX|1|2|G|509
4CUX|1|2|G|510
4CUX|1|2|A|511
4CUX|1|2|A|512
4CUX|1|2|U|513
4CUX|1|2|G|514
4CUX|1|2|A|515
4CUX|1|2|G|516
*
4CUX|1|2|C|536
4CUX|1|2|G|537
4CUX|1|2|A|538
4CUX|1|2|G|539
4CUX|1|2|G|540
4CUX|1|2|A|541
4CUX|1|2|A|542
4CUX|1|2|C|543
4CUX|1|2|A|544
4CUX|1|2|A|545
4CUX|1|2|U|546
*
4CUX|1|2|A|592
4CUX|1|2|U|593
4CUX|1|2|A|594
4CUX|1|2|G|595

Current chains

Chain 2

18S RRNA

Nearby chains