J5_4CUX_004

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAUC*GAUGGUU

Length

46 nucleotides

Bulged bases

4CUX|1|2|U|132, 4CUX|1|2|U|133, 4CUX|1|2|A|140, 4CUX|1|2|U|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CUX|1|2|A|124
4CUX|1|2|U|125
4CUX|1|2|A|126
4CUX|1|2|G|127
4CUX|1|2|U|128
4CUX|1|2|U|129
4CUX|1|2|C|130
4CUX|1|2|C|131
4CUX|1|2|U|132
4CUX|1|2|U|133
4CUX|1|2|U|134
4CUX|1|2|A|135
4CUX|1|2|C|136
4CUX|1|2|U|137
4CUX|1|2|A|138
4CUX|1|2|C|139
4CUX|1|2|A|140
4CUX|1|2|U|141
4CUX|1|2|G|142
4CUX|1|2|G|143
*
4CUX|1|2|C|172
4CUX|1|2|A|173
4CUX|1|2|U|174
4CUX|1|2|G|175
4CUX|1|2|C|176
4CUX|1|2|U|177
4CUX|1|2|U|178
4CUX|1|2|A|179
4CUX|1|2|A|180
4CUX|1|2|A|181
4CUX|1|2|A|182
*
4CUX|1|2|U|203
4CUX|1|2|G|204
*
4CUX|1|2|C|263
4CUX|1|2|G|264
4CUX|1|2|A|265
4CUX|1|2|A|266
4CUX|1|2|U|267
4CUX|1|2|C|268
*
4CUX|1|2|G|287
4CUX|1|2|A|288
4CUX|1|2|U|289
4CUX|1|2|G|290
4CUX|1|2|G|291
4CUX|1|2|U|292
4CUX|1|2|U|293

Current chains

Chain 2

18S RRNA

Nearby chains