Loop J5_4CXE

3D structure

PDB id: 4CXE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å

Loop

Sequence: CCAGCGCCGAAUCCC*GACAUGUGGCGUACG*CCGGAGUCG*CAAAGCG*UAAG
Length: 50 nucleotides
Bulged bases: 4CXE|1|2|G|116, 4CXE|1|2|G|119, 4CXE|1|2|A|120, 4CXE|1|2|G|148, 4CXE|1|2|U|149, 4CXE|1|2|A|155, 4CXE|1|2|C|156, 4CXE|1|2|C|300
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4CXE|1|2|C|111
4CXE|1|2|C|112
4CXE|1|2|A|113
4CXE|1|2|G|114
4CXE|1|2|C|115
4CXE|1|2|G|116
4CXE|1|2|C|117
4CXE|1|2|C|118
4CXE|1|2|G|119
4CXE|1|2|A|120
4CXE|1|2|A|121
4CXE|1|2|U|122
4CXE|1|2|C|123
4CXE|1|2|C|124
4CXE|1|2|C|125
*
4CXE|1|2|G|143
4CXE|1|2|A|144
4CXE|1|2|C|145
4CXE|1|2|A|146
4CXE|1|2|U|147
4CXE|1|2|G|148
4CXE|1|2|U|149
4CXE|1|2|G|150
4CXE|1|2|G|151
4CXE|1|2|C|152
4CXE|1|2|G|153
4CXE|1|2|U|154
4CXE|1|2|A|155
4CXE|1|2|C|156
4CXE|1|2|G|157
*
4CXE|1|2|C|266
4CXE|1|2|C|267
4CXE|1|2|G|268
4CXE|1|2|G|269
4CXE|1|2|A|270
4CXE|1|2|G|271
4CXE|1|2|U|272
4CXE|1|2|C|273
4CXE|1|2|G|274
*
4CXE|1|2|C|295
4CXE|1|2|A|296
4CXE|1|2|A|297
4CXE|1|2|A|298
4CXE|1|2|G|299
4CXE|1|2|C|300
4CXE|1|2|G|301
*
4CXE|1|2|U|318
4CXE|1|2|A|319
4CXE|1|2|A|320
4CXE|1|2|G|321

Current chains

Chain 2: 28S RRNA

Nearby chains

Chain 3: 5.8S ribosomal RNA; 5.8S rRNA

J5_4CXE_001