J5_4CXE_002

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

4CXE|1|2|C|2265, 4CXE|1|2|U|2327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|G|1315
4CXE|1|2|G|1316
4CXE|1|2|A|1317
4CXE|1|2|G|1318
4CXE|1|2|U|1319
4CXE|1|2|C|1320
*
4CXE|1|2|G|1495
4CXE|1|2|G|1496
4CXE|1|2|A|1497
4CXE|1|2|C|1498
*
4CXE|1|2|G|1637
4CXE|1|2|U|1638
4CXE|1|2|U|1639
4CXE|1|2|C|1640
*
4CXE|1|2|G|2264
4CXE|1|2|C|2265
4CXE|1|2|C|2266
*
4CXE|1|2|G|2322
4CXE|1|2|C|2323
4CXE|1|2|A|2324
4CXE|1|2|G|2325
4CXE|1|2|A|2326
4CXE|1|2|U|2327
4CXE|1|2|C|2328

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA