J5_4CXE_003

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

4CXE|1|2|G|3589, 4CXE|1|2|G|3594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|G|2832
4CXE|1|2|C|2833
4CXE|1|2|A|2834
4CXE|1|2|A|2835
4CXE|1|2|G|2836
4CXE|1|2|C|2837
4CXE|1|2|C|2838
4CXE|1|2|G|2839
4CXE|1|2|G|2840
*
4CXE|1|2|U|2864
4CXE|1|2|G|2865
*
4CXE|1|2|U|3582
4CXE|1|2|G|3583
*
4CXE|1|2|C|3587
4CXE|1|2|G|3588
4CXE|1|2|G|3589
4CXE|1|2|A|3590
4CXE|1|2|C|3591
4CXE|1|2|C|3592
4CXE|1|2|A|3593
4CXE|1|2|G|3594
4CXE|1|2|G|3595
*
4CXE|1|2|C|3804
4CXE|1|2|A|3805
4CXE|1|2|C|3806

Current chains

Chain 2

28S RRNA

Nearby chains