J5_4CXE_004

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGAAGACC*GGAUAACUGGCU*GAUCCUUCGAUGU*GUUUAG*UAGUUU

Length

45 nucleotides

Bulged bases

4CXE|1|2|A|3875, 4CXE|1|2|A|4354, 4CXE|1|2|U|4355, 4CXE|1|2|G|4408, 4CXE|1|2|U|4410, 4CXE|1|2|U|4515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4CXE|1|2|A|3872
4CXE|1|2|G|3873
4CXE|1|2|A|3874
4CXE|1|2|A|3875
4CXE|1|2|G|3876
4CXE|1|2|A|3877
4CXE|1|2|C|3878
4CXE|1|2|C|3879
*
4CXE|1|2|G|4352
4CXE|1|2|G|4353
4CXE|1|2|A|4354
4CXE|1|2|U|4355
4CXE|1|2|A|4356
4CXE|1|2|A|4357
4CXE|1|2|C|4358
4CXE|1|2|U|4359
4CXE|1|2|G|4360
4CXE|1|2|G|4361
4CXE|1|2|C|4362
4CXE|1|2|U|4363
*
4CXE|1|2|G|4400
4CXE|1|2|A|4401
4CXE|1|2|U|4402
4CXE|1|2|C|4403
4CXE|1|2|C|4404
4CXE|1|2|U|4405
4CXE|1|2|U|4406
4CXE|1|2|C|4407
4CXE|1|2|G|4408
4CXE|1|2|A|4409
4CXE|1|2|U|4410
4CXE|1|2|G|4411
4CXE|1|2|U|4412
*
4CXE|1|2|G|4489
4CXE|1|2|U|4490
4CXE|1|2|U|4491
4CXE|1|2|U|4492
4CXE|1|2|A|4493
4CXE|1|2|G|4494
*
4CXE|1|2|U|4512
4CXE|1|2|A|4513
4CXE|1|2|G|4514
4CXE|1|2|U|4515
4CXE|1|2|U|4516
4CXE|1|2|U|4517

Current chains

Chain 2

28S RRNA

Nearby chains