J5_4D5L_001
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 37 nucleotides
- Bulged bases
- 4D5L|1|1|U|524, 4D5L|1|1|A|526, 4D5L|1|1|G|589, 4D5L|1|1|A|590, 4D5L|1|1|U|591, 4D5L|1|1|C|593
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|C|30
4D5L|1|1|U|31
4D5L|1|1|U|32
4D5L|1|1|G|33
4D5L|1|1|U|34
*
4D5L|1|1|A|521
4D5L|1|1|A|522
4D5L|1|1|A|523
4D5L|1|1|U|524
4D5L|1|1|A|525
4D5L|1|1|A|526
4D5L|1|1|C|527
4D5L|1|1|A|528
*
4D5L|1|1|U|557
4D5L|1|1|G|558
4D5L|1|1|G|559
4D5L|1|1|A|560
4D5L|1|1|A|561
4D5L|1|1|U|562
4D5L|1|1|G|563
4D5L|1|1|A|564
4D5L|1|1|G|565
*
4D5L|1|1|C|585
4D5L|1|1|G|586
4D5L|1|1|A|587
4D5L|1|1|G|588
4D5L|1|1|G|589
4D5L|1|1|A|590
4D5L|1|1|U|591
4D5L|1|1|C|592
4D5L|1|1|C|593
4D5L|1|1|A|594
4D5L|1|1|U|595
*
4D5L|1|1|A|641
4D5L|1|1|U|642
4D5L|1|1|A|643
4D5L|1|1|G|644
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain J
- 40S RIBOSOMAL PROTEIN US4
- Chain X
- 40S RIBOSOMAL PROTEIN US12
- Chain e
- 40S RIBOSOMAL PROTEIN ES4
Coloring options: