J5_4D61_002
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4D61|1|1|U|55, 4D61|1|1|A|92, 4D61|1|1|C|472
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4D61_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1552
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4D61|1|1|C|53
4D61|1|1|A|54
4D61|1|1|U|55
4D61|1|1|G|56
*
4D61|1|1|C|89
4D61|1|1|G|90
4D61|1|1|A|91
4D61|1|1|A|92
4D61|1|1|U|93
4D61|1|1|G|94
4D61|1|1|G|95
4D61|1|1|C|96
*
4D61|1|1|G|434
4D61|1|1|A|435
4D61|1|1|G|436
*
4D61|1|1|C|457
4D61|1|1|A|458
4D61|1|1|C|459
*
4D61|1|1|G|470
4D61|1|1|G|471
4D61|1|1|C|472
4D61|1|1|A|473
4D61|1|1|G|474
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
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